TreeMicInterV1, Main, Exploration, bibRecord, 000105

Moss habitats distinctly affect their associated bacterial community structures as revealed by the high-throughput sequencing method.

Identifieur interne : 000105 ( Main/Exploration ); précédent : 000104; suivant : 000106

Moss habitats distinctly affect their associated bacterial community structures as revealed by the high-throughput sequencing method.

Auteurs : Su Wang [République populaire de Chine] ; Jing Yan Tang [République populaire de Chine] ; Jing Ma [République populaire de Chine] ; Xue Dong Li [République populaire de Chine] ; Yan Hong Li [République populaire de Chine]

Source :

World journal of microbiology & biotechnology [ 1573-0972 ] ; 2018.

RBID : pubmed:29605884

Descripteurs français

KwdFr :
- ADN bactérien (analyse), ADN ribosomique (génétique), ARN bactérien (analyse), ARN ribosomique 16S (génétique), Bactéries (classification), Bactéries (génétique), Biodiversité (MeSH), Bryophyta (microbiologie), Consortiums microbiens (MeSH), Phylogenèse (MeSH), Phénomènes physiologiques bactériens (MeSH), Pékin (MeSH), Séquençage nucléotidique à haut débit (méthodes), Écosystème (MeSH).
MESH :
- analyse : ADN bactérien, ARN bactérien.
- génétique : ADN ribosomique, ARN ribosomique 16S, Bactéries.
- microbiologie : Bryophyta.
- méthodes : Séquençage nucléotidique à haut débit.
- classification : Bactéries, Biodiversité, Consortiums microbiens, Phylogenèse, Phénomènes physiologiques bactériens, Pékin, Écosystème.

English descriptors

KwdEn :
- Bacteria (classification), Bacteria (genetics), Bacterial Physiological Phenomena (MeSH), Beijing (MeSH), Biodiversity (MeSH), Bryophyta (microbiology), DNA, Bacterial (analysis), DNA, Ribosomal (genetics), Ecosystem (MeSH), High-Throughput Nucleotide Sequencing (methods), Microbial Consortia (MeSH), Phylogeny (MeSH), RNA, Bacterial (analysis), RNA, Ribosomal, 16S (genetics).
MESH :
- chemical , analysis : DNA, Bacterial, RNA, Bacterial.
- classification : Bacteria.
- genetics : Bacteria, DNA, Ribosomal, RNA, Ribosomal, 16S.
- methods : High-Throughput Nucleotide Sequencing.
- microbiology : Bryophyta.
- Bacterial Physiological Phenomena, Beijing, Biodiversity, Ecosystem, Microbial Consortia, Phylogeny.

Abstract

To better understand the factors that influence the distribution of bacteria associated with mosses, the communities inhabiting in five moss species from two different habitats in Beijing Songshan National Nature Reserve were investigated using the high-throughput sequencing method. The sequencing was performed based on the bacterial 16S rRNA and 16S rDNA libraries. Results showed that there are abundant bacteria inhabiting in all the mosses sampled. The taxonomic analysis of these bacteria showed that they mainly consisted of those in the phyla Proteobacteria and Actinobacteria, and seldom were from phylum Armatimonadetes, Bacteroidetes and Firmicutes. The hierarchical cluster tree, based on the OTU level, divided the bacteria associated with all samples into two branches according to the habitat types of the host (terrestrial and aquatic). The PCoA diagram further divided the bacterial compositions into four groups according to both types of habitats and the data sources (DNA and RNA). There were larger differences in the bacterial community composition in the mosses collected from aquatic habitat than those of terrestrial one, whether at the DNA or RNA level. Thus, this survey supposed that the habitat where the host was growing was a relevant factor influencing bacterial community composition. In addition, the bacterial community detected at the RNA level was more sensitive to the habitat of the growing host, which could also be proved by the significantly differences in the predicted function by PICRUSt and the metabolically active dominant genera between different groups. This study expands the knowledge about the interactions between mosses and microbes.

DOI: 10.1007/s11274-018-2436-5
PubMed: 29605884

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000112
to stream Main, to step Curation: 000112

Le document en format XML

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<front><div type="abstract" xml:lang="en">To better understand the factors that influence the distribution of bacteria associated with mosses, the communities inhabiting in five moss species from two different habitats in Beijing Songshan National Nature Reserve were investigated using the high-throughput sequencing method. The sequencing was performed based on the bacterial 16S rRNA and 16S rDNA libraries. Results showed that there are abundant bacteria inhabiting in all the mosses sampled. The taxonomic analysis of these bacteria showed that they mainly consisted of those in the phyla Proteobacteria and Actinobacteria, and seldom were from phylum Armatimonadetes, Bacteroidetes and Firmicutes. The hierarchical cluster tree, based on the OTU level, divided the bacteria associated with all samples into two branches according to the habitat types of the host (terrestrial and aquatic). The PCoA diagram further divided the bacterial compositions into four groups according to both types of habitats and the data sources (DNA and RNA). There were larger differences in the bacterial community composition in the mosses collected from aquatic habitat than those of terrestrial one, whether at the DNA or RNA level. Thus, this survey supposed that the habitat where the host was growing was a relevant factor influencing bacterial community composition. In addition, the bacterial community detected at the RNA level was more sensitive to the habitat of the growing host, which could also be proved by the significantly differences in the predicted function by PICRUSt and the metabolically active dominant genera between different groups. This study expands the knowledge about the interactions between mosses and microbes.</div>
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<Abstract><AbstractText>To better understand the factors that influence the distribution of bacteria associated with mosses, the communities inhabiting in five moss species from two different habitats in Beijing Songshan National Nature Reserve were investigated using the high-throughput sequencing method. The sequencing was performed based on the bacterial 16S rRNA and 16S rDNA libraries. Results showed that there are abundant bacteria inhabiting in all the mosses sampled. The taxonomic analysis of these bacteria showed that they mainly consisted of those in the phyla Proteobacteria and Actinobacteria, and seldom were from phylum Armatimonadetes, Bacteroidetes and Firmicutes. The hierarchical cluster tree, based on the OTU level, divided the bacteria associated with all samples into two branches according to the habitat types of the host (terrestrial and aquatic). The PCoA diagram further divided the bacterial compositions into four groups according to both types of habitats and the data sources (DNA and RNA). There were larger differences in the bacterial community composition in the mosses collected from aquatic habitat than those of terrestrial one, whether at the DNA or RNA level. Thus, this survey supposed that the habitat where the host was growing was a relevant factor influencing bacterial community composition. In addition, the bacterial community detected at the RNA level was more sensitive to the habitat of the growing host, which could also be proved by the significantly differences in the predicted function by PICRUSt and the metabolically active dominant genera between different groups. This study expands the knowledge about the interactions between mosses and microbes.</AbstractText>
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	Serveur d'exploration sur les interactions arbre microorganisme
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Moss habitats distinctly affect their associated bacterial community structures as revealed by the high-throughput sequencing method.

Moss habitats distinctly affect their associated bacterial community structures as revealed by the high-throughput sequencing method.

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